Many Other Tasks at/near Stanford
Matching cell / protein 3D with chemical’s 3D
Regulatory Gene motifs :
- Bioprospector [ Brutlag & Liu <www-cmgm.stanford.edu> ]
Protein structure generation
- moving from small to larger proteins
1: Powerful parallel processing [IBM BlueGene]
2: Two-level : use features as an intermediate
(alpha-helix, beta-sheets, …)
3: Protein Folding speedup by delegation
[Shirts & Pande: foldingathome.stanford.edu ]
RNA folding (simpler, larger) [Nakatani & Pande]